Academic articles
- An image processing pipeline for electron cryo-tomography in RELION-5 A. Burt, B. Toader, R. Warshamanage, A. von Kügelgen, E. Pyle, J. Zivanov, D. Kimanius, T.A.M. Bharat, S.H.W. Scheres bioRxiv: https://doi.org/10.1101/2024.04.26.591129, 2024
- Efficient high-resolution refinement in cryo-EM with stochastic gradient descent B. Toader, M. A. Brubaker, R. R. Lederman arXiv:2311.16100, 2023
- On Manifold Learning in Plato's Cave: Remarks on Manifold Learning and Physical Phenomena R. R. Lederman, B. Toader International Conference on Sampling Theory and Applications (SampTA), 2023
- Methods for Cryo-EM Single Particle Reconstruction of Macromolecules Having Continuous Heterogeneity B. Toader, F. J. Sigworth, R. R. Lederman Journal of Molecular Biology, 2023
- Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mixture models M. Chen, B. Toader, R. R. Lederman Journal of Molecular Biology, 2023
- Image reconstruction in light-sheet microscopy: spatially varying deconvolution and mixed noise B. Toader, J. Boulanger, Y. Korolev, M. O. Lenz, J. Manton, C.-B. Schönlieb, L. Mureşan Journal of Mathematical Imaging and Vision, 2022
- Sparse non-negative super-resolution --- simplified and stabilised A. Eftekhari, J. Tanner, A. Thompson, B. Toader and H. Tyagi Applied and Computational Harmonic Analysis, 2021
- The dual approach to non-negative super-resolution: perturbation analysis S. Chrétien, A. Thompson, B. Toader Submitted, arXiv:2007.02708, 2020
- The dual approach to non-negative super-resolution: impact on primal reconstruction accuracy S. Chrétien, A. Thompson, B. Toader 2019 13th International Conference on Sampling Theory and Applications (SampTA), 2019
- Global air transport complex network: multi-scale analysis W. Guo, B. Toader, R. Feier, G. Mosquera, F. Ying, S. Oh, M. Williams, A. Krupp Springer Nature Applied Sciences (SNAS), vol.1, 680, 2019
- Non-negative super-resolution is stable A. Eftekhari, J. Tanner, A. Thompson, B. Toader and H. Tyagi 2018 IEEE Data Science Workshop (DSW), 2018
PhD Thesis
- Stability and perturbation analysis of non-negative super-resolution University of Oxford, Trinity term, 2019
Reports
- White Paper: Computational Microscopy IPAM Long Program, UCLA, US, Fall 2022
- Data Study Group Final Report: Dstl -- Bright-field image segmentation Zenodo, https://doi.org/10.5281/zenodo.4452761 Alan Turing Institute, UK, December 2019
- Study Group Report: Sustainable Income Algorithm Mathematics in Industry Reports, https://doi.org/10.33774/miir-2021-5wvbh European Study Group with Industry 142, Lithuania, June 2018