Publications

Academic articles

1. Efficient high-resolution refinement in cryo-EM with stochastic gradient descent
   B. Toader, M. A. Brubaker, R. R. Lederman
   arXiv:2311.16100, 2023


2. On Manifold Learning in Plato's Cave: Remarks on Manifold Learning and Physical Phenomena
   R. R. Lederman, B. Toader
   International Conference on Sampling Theory and Applications (SampTA), 2023


3. Methods for Cryo-EM Single Particle Reconstruction of Macromolecules Having Continuous Heterogeneity
   B. Toader, F. J. Sigworth, R. R. Lederman
   Journal of Molecular Biology, 2023


4. Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mixture models
   M. Chen, B. Toader, R. R. Lederman
   Journal of Molecular Biology, 2023


5. Image reconstruction in light-sheet microscopy: spatially varying deconvolution and mixed noise
   B. Toader, J. Boulanger, Y. Korolev, M. O. Lenz, J. Manton, C.-B. Schönlieb, L. Mureşan
   Journal of Mathematical Imaging and Vision, 2022


6. Sparse non-negative super-resolution --- simplified and stabilised
   A. Eftekhari, J. Tanner, A. Thompson, B. Toader and H. Tyagi
   Applied and Computational Harmonic Analysis, 2021


7. The dual approach to non-negative super-resolution: perturbation analysis
   S. Chrétien, A. Thompson, B. Toader
   Submitted, arXiv:2007.02708, 2020


8. The dual approach to non-negative super-resolution: impact on primal reconstruction accuracy
   S. Chrétien, A. Thompson, B. Toader
   2019 13th International Conference on Sampling Theory and Applications (SampTA), 2019


9. Global air transport complex network: multi-scale analysis
   W. Guo, B. Toader, R. Feier, G. Mosquera, F. Ying, S. Oh, M. Williams, A. Krupp
   Springer Nature Applied Sciences (SNAS), vol.1, 680, 2019


10. Non-negative super-resolution is stable
    A. Eftekhari, J. Tanner, A. Thompson, B. Toader and H. Tyagi
    2018 IEEE Data Science Workshop (DSW), 2018

PhD Thesis

1. Stability and perturbation analysis of non-negative super-resolution
   University of Oxford, Trinity term, 2019

Reports

1. White Paper: Computational Microscopy
   IPAM Long Program, UCLA, US, Fall 2022


2. Data Study Group Final Report: Dstl -- Bright-field image segmentation
   Zenodo, https://doi.org/10.5281/zenodo.4452761
   Alan Turing Institute, UK, December 2019
   


3. Study Group Report: Sustainable Income Algorithm
   Mathematics in Industry Reports, https://doi.org/10.33774/miir-2021-5wvbh
   European Study Group with Industry 142, Lithuania, June 2018

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